Data Warehouse ProSight 3.0

Unlike other search engines, ProSightPC utilizes prior knowledge of the location of post translational and sequence modifications. This prior knowledge is stored in our proprietary PTM Warehouse™ file format. Users of all versions of ProSightPC 3 can use these files to install our compilation of the known modification information of specific organisms.

If you have any questions or requests, please contact the developers.

If you would like a database to be created for a particular organism, please send the taxonomy id here. Taxon identifiers can be found here. For instance, if you search for “Homo sapiens” on that UniProt site, the Taxon identifier is 9606.


Organism/Species Strain Files Available for Download
Methanocaldo jannaschii ATCC 43067 TD Complex PWF (1 MB) Bottom Up PWF (26 MB) UniProt Text File (6 MB)
Methanosarcina acetivorans ATCC 35395 C2A TD Complex PWF (4 MB) Bottom Up PWF (55 MB) UniProt Text File (15 MB)
Nitrosopumilus maritimus SCM1 TD Complex PWF (1 MB) Bottom Up PWF (21 MB) UniProt Text File (5 MB)
Sulfolobus solfataricus ATCC 35092 P2 TD Complex PWF (2 MB) Bottom Up PWF (34 MB) UniProt Text File (10 MB)

Organism/Species Strain Files Available for Download
Dictyostelium discoideum TD Complex PWF (20 MB) TD Simple PWF (18 MB) Bottom Up PWF (250 MB) UniProt Text File (61 MB)
Entamoeba histolytica TD Complex PWF (9 MB) TD Simple PWF (9 MB) Bottom Up PWF (138 MB) UniProt Text File (28 MB)
Plasmodium falciparum TD Complex PWF (10 MB) TD Simple PWF (10 MB) Bottom Up PWF (185 MB) UniProt Text File (24 MB)
Toxoplasma gondii TD Complex PWF (15 MB) TD Simple PWF (14 MB) Bottom Up PWF (247 MB) UniProt Text File (24 MB)
Aedes aegypti TD Complex PWF (23 MB) TD Simple PWF (22 MB) Bottom Up PWF (295 MB) UniProt Text File (73 MB)
Anopheles gambiae TD Complex PWF (20 MB) TD Simple PWF (20 MB) Bottom Up PWF (264 MB) UniProt Text File (66 MB)
Apis mellifera TD Complex PWF (19 MB) TD Simple PWF (18 MB) Bottom Up PWF (270 MB) UniProt Text File (43 MB)
Drosophila melanogaster TD Complex PWF (65 MB) TD Simple PWF (46 MB) Bottom Up PWF (365 MB) UniProt Text File (242 MB)
Tetrahymena thermophila SB210 TD Complex PWF (44 MB) TD Simple PWF (43 MB) Bottom Up PWF (667 MB) UniProt Text File (95 MB)
Strongylo purpuratus TD Complex PWF (42 MB) TD Simple PWF (38 MB) Bottom Up PWF (480 MB) UniProt Text File (79 MB)
Trypanosoma brucei brucei 927/4 GUTat10.1 TD Complex PWF (12 MB) TD Simple PWF (11 MB) Bottom Up PWF (177 MB) UniProt Text File (41 MB)
Trypanosoma cruzi TD Complex PWF (14 MB) TD Simple PWF (14 MB) Bottom Up PWF (204 MB) UniProt Text File (31 MB)
Aspergillus flavus ATCC 200026 TD Complex PWF (16 MB) TD Simple PWF (16 MB) Bottom Up PWF (223 MB) UniProt Text File (41 MB)
Aspergillus niger ATCC 1015 TD Complex PWF (14 MB) TD Simple PWF (14 MB) Bottom Up PWF (206 MB) UniProt Text File (41 MB)
Aspergillus orzyae ATCC 42149 TD Complex PWF (16 MB) TD Simple PWF (15 MB) Bottom Up PWF (214 MB) UniProt Text File (43 MB)
Candida albicans SC5314 TD Complex PWF (10 MB) TD Simple PWF (9 MB) Bottom Up PWF (95 MB) UniProt Text File (22 MB)
Emericella nidulans ATCC 38163 TD Complex PWF (14 MB) TD Simple PWF (14 MB) Bottom Up PWF (201 MB) UniProt Text File (57 MB)
Neurospora crassa ATCC 24698 TD Complex PWF (15 MB) TD Simple PWF (14 MB) Bottom Up PWF (202 MB) UniProt Text File (42 MB)
Saccharomyces cerevisiae ATCC204508 S288 TD Complex PWF (33 MB) TD Simple PWF (11 MB) Bottom Up PWF (138 MB) UniProt Text File (59 MB)
Schizosaccharomyces pombe ATCC 24843 TD Complex PWF (19 MB) TD Simple PWF (7 MB) Bottom Up PWF (106 MB) UniProt Text File (32 MB)
Caenorhabditis briggsae TD Complex PWF (11 MB) TD Simple PWF (11 MB) Bottom Up PWF (152 MB) UniProt Text File (31 MB)
Caenorhabditis elegans TD Complex PWF (49 MB) TD Simple PWF (39 MB) Bottom Up PWF (398 MB) UniProt Text File (98 MB)
Ailuropoda melanoleuca TD Complex PWF (31 MB) TD Simple PWF (29 MB) Bottom Up PWF (404 MB) UniProt Text File (106 MB)
Bos taurus TD Complex PWF (200 MB) TD Simple PWF (43 MB) Bottom Up PWF (467 MB) UniProt Text File (113 MB)
Canis familiaris TD Complex PWF (65 MB) TD Simple PWF (41 MB) Bottom Up PWF (474 MB) UniProt Text File (179 MB)
Danio rerio TD Complex PWF (74 MB) TD Simple PWF (59 MB) Bottom Up PWF (618 MB) UniProt Text File (263 MB)
Equus caballus TD Complex PWF (47 MB) TD Simple PWF (35 MB) Bottom Up PWF (427 MB) UniProt Text File (112 MB)
Gallus gallus TD Complex PWF (52 MB) TD Simple PWF (29 MB) Bottom Up PWF (376 MB) UniProt Text File (115 MB)
Gorilla gorilla gorilla TD Complex PWF (47 MB) TD Simple PWF (40 MB) Bottom Up PWF (458 MB) UniProt Text File (99 MB)
Homo sapiens TD Complex PWF (2 GB) TD Simple PWF (625 MB) Bottom Up PWF (705 MB) UniProt Text File (309 MB)
Loxodonta africana TD Complex PWF (41 MB) TD Simple PWF (37 MB) Bottom Up PWF (439 MB) UniProt Text File (100 MB)
Macaca fascicularis TD Complex PWF (25 MB) TD Simple PWF (23 MB) Bottom Up PWF (337 MB) UniProt Text File (61 MB)
Macaca mulatta TD Complex PWF (69 MB) TD Simple PWF (48 MB) Bottom Up PWF (489 MB) UniProt Text File (218 MB)
Mus musculus TD Complex PWF (343 MB) TD Simple PWF (63 MB) Bottom Up PWF (476 MB) UniProt Text File (173 MB)
Oryctolagus cuniculus TD Complex PWF (61 MB) TD Simple PWF (31 MB) Bottom Up PWF (415 MB) UniProt Text File (113 MB)
Pan troglodytes TD Complex PWF (49 MB) TD Simple PWF (30 MB) Bottom Up PWF (410 MB) UniProt Text File (94 MB)
Rattus norvegicus TD Complex PWF (299 MB) TD Simple PWF (58 MB) Bottom Up PWF (522 MB) UniProt Text File (230 MB)
Sus scrofa TD Complex PWF (85 MB) TD Simple PWF (34 MB) Bottom Up PWF (385 MB) UniProt Text File (101 MB)
Taeniopygia guttata TD Complex PWF (23 MB) TD Simple PWF (22 MB) Bottom Up PWF (310 MB) UniProt Text File (85 MB)
Takifugu rubripes TD Complex PWF (81 MB) TD Simple PWF (78 MB) Bottom Up PWF (594 MB) UniProt Text File (208 MB)
Xenopus tropicalis TD Complex PWF (39 MB) TD Simple PWF (34 MB) Bottom Up PWF (424 MB) UniProt Text File (108 MB)
Arabidopsis thaliana TD Complex PWF (89 MB) TD Simple PWF (47 MB) Bottom Up PWF (532 MB) UniProt Text File (214 MB)
Oryza sativa TD Complex PWF (68 MB) TD Simple PWF (64 MB) Bottom Up PWF (719 MB) UniProt Text File (394 MB)
Solanum lycopersicum TD Complex PWF (38 MB) TD Simple PWF (37 MB) Bottom Up PWF (481 MB) UniProt Text File (122 MB)
Solanum tuberosum TD Complex PWF (52 MB) TD Simple PWF (50 MB) Bottom Up PWF (524 MB) UniProt Text File (149 MB)
Vitis vinifera TD Complex PWF (32 MB) TD Simple PWF (32 MB) Bottom Up PWF (422 MB) UniProt Text File (108 MB)

Organism/Species Strain Files Available for Download
Mycobacterium smegmatis ATCC 700084 TD Complex PWF (6 MB) Bottom Up PWF (77 MB) UniProt Text File (26 MB)
Mycobacterium tuberculosis ATCC 9360 TD Complex PWF (5 MB) Bottom Up PWF (49 MB) UniProt Text File (20 MB)
Streptomyces coelicolor ATCC BAA471 TD Complex PWF (8 MB) Bottom Up PWF (104 MB) UniProt Text File (29 MB)
Deinococcus radiodurans ATCC 13939 TD Complex PWF (2 MB) Bottom Up PWF (37 MB) UniProt Text File (11 MB)
Bacillus anthracis ATCC 14578 TD Complex PWF (4 MB) Bottom Up PWF (62 MB) UniProt Text File (32 MB)
Bacillus cereus ATCC 10987 TD Complex PWF (4 MB) Bottom Up PWF (64 MB) UniProt Text File (17 MB)
Bacillus subtilis 168 TD Complex PWF (4 MB) Bottom Up PWF (54 MB) UniProt Text File (26 MB)
Clostridium acetobutylicum ATCC 824 TD Complex PWF (3 MB) Bottom Up PWF (54 MB) UniProt Text File (13 MB)
Enterococcus faecalis ATCC 700802 TD Complex PWF (3 MB) Bottom Up PWF (39 MB) UniProt Text File (11 MB)
Lactococcus lactis IL1403 TD Complex PWF (2 MB) Bottom Up PWF (27 MB) UniProt Text File (7 MB)
Listeria monocytogenes ATCC BAA-679 TD Complex PWF (2 MB) Bottom Up PWF (37 MB) UniProt Text File (11 MB)
Staphylococcus aureus NCTC 8325 TD Complex PWF (2 MB) Bottom Up PWF (34 MB) UniProt Text File (9 MB)
Streptococcus pneumoniae ATCC BAA-255 TD Complex PWF (1 MB) Bottom Up PWF (24 MB) UniProt Text File (7 MB)
Agrobacterium tumefaciens C58 ATCC 33970 TD Complex PWF (5 MB) Bottom Up PWF (68 MB) UniProt Text File (23 MB)
Bordetella pertussis ATCC 9797 TD Complex PWF (3 MB) Bottom Up PWF (42 MB) UniProt Text File (10 MB)
Caulobacter crescentus ATCC 19089 TD Complex PWF (3 MB) Bottom Up PWF (50 MB) UniProt Text File (13 MB)
Escherichia coli ATCC 33849 K12 TD Complex PWF (5 MB) Bottom Up PWF (58 MB) UniProt Text File (32 MB)
Francisella tularensis SCHU S4 TD Complex PWF (1 MB) Bottom Up PWF (21 MB) UniProt Text File (6 MB)
Haemophilus influenzae ATCC 51907 TD Complex PWF (1 MB) Bottom Up PWF (23 MB) UniProt Text File (7 MB)
Helicobacter pylori ATCC 700392 TD Complex PWF (2 MB) Bottom Up PWF (23 MB) UniProt Text File (6 MB)
Klebsiella pneumoniae ATCC 700721 TD Complex PWF (5 MB) Bottom Up PWF (63 MB) UniProt Text File (17 MB)
Neisseria gonorrhoeae ATCC 700825 TD Complex PWF (1 MB) Bottom Up PWF (25 MB) UniProt Text File (6 MB)
Neisseria meningitidis MC58 TD Complex PWF (2 MB) Bottom Up PWF (25 MB) UniProt Text File (7 MB)
Pseudomonas aeruginosa ATCC 15692 PAO1 TD Complex PWF (6 MB) Bottom Up PWF (78 MB) UniProt Text File (22 MB)
Salmonella typhimurium LT2 ATCC 700720 TD Complex PWF (5 MB) Bottom Up PWF (59 MB) UniProt Text File (18 MB)
Shewanella oneidensis MR-1 TD Complex PWF (4 MB) Bottom Up PWF (53 MB) UniProt Text File (15 MB)
Vibrio cholerae ATCC 39315 TD Complex PWF (3 MB) Bottom Up PWF (46 MB) UniProt Text File (14 MB)
Vibrio fischeri ATCC 700601 TD Complex PWF (3 MB) Bottom Up PWF (50 MB) UniProt Text File (13 MB)
Yersinia pestis ATCC 19428 TD Complex PWF (3 MB) Bottom Up PWF (49 MB) UniProt Text File (19 MB)
Borrelia burgdorferi ATCC 35210 TD Complex PWF (1 MB) Bottom Up PWF (17 MB) UniProt Text File (4 MB)
Mycoplasma genitalium ATCC 33530 TD Complex PWF (570 KB) Bottom Up PWF (8 MB) UniProt Text File (2 MB)
Mycoplasma pneumoniae ATCC 29342 TD Complex PWF (854 KB) Bottom Up PWF (11 MB) UniProt Text File (2 MB)
Thermotoga maritima ATCC 43589 TD Complex PWF (3 MB) Bottom Up PWF (27 MB) UniProt Text File (8 MB)